Posts by Tags

acl

amia

bioinformatics

Paper published in Briefings in Bioinformatics

Published:

Our paper “Knowledge bases and software support for variant interpretation in precision oncology” has been published in Briefings in Bioinformatics! Thanks to all collaborators from the HiGHmed consortium.

ebm

ggponc

1st GGPONC User Meeting

Published:

I have organized a workshop with experts from both the German clinical NLP and the clinical guideline communities, to deepen the dialogue that we have started with our GGPONC project. Check out the event website for details.

GGPONC 2.0 @ LREC

Published:

Our paper for the new release of GGPONC 2.0 has been accepted at LREC! The new dataset is currently the largest, freely distributable annotated corpus of German medical text (1.87M tokens, 250K annotations). We also created baseline NER models with HuggingFace transformers.

Talk at GIN Conference in Toronto

Published:

I gave a talk at the GIN 2022 Conference in Toronto about “Continuous Surveillance of Clinical Practice Guidelines through Natural Language Processing - Experiences from the GGPONC Project”. It was a very inspiring event with great conversations about the role NLP can play in guideline development and evidence synthesis.

highmed

Paper published in Briefings in Bioinformatics

Published:

Our paper “Knowledge bases and software support for variant interpretation in precision oncology” has been published in Briefings in Bioinformatics! Thanks to all collaborators from the HiGHmed consortium.

nge

nlp

1st GGPONC User Meeting

Published:

I have organized a workshop with experts from both the German clinical NLP and the clinical guideline communities, to deepen the dialogue that we have started with our GGPONC project. Check out the event website for details.

GGPONC 2.0 @ LREC

Published:

Our paper for the new release of GGPONC 2.0 has been accepted at LREC! The new dataset is currently the largest, freely distributable annotated corpus of German medical text (1.87M tokens, 250K annotations). We also created baseline NER models with HuggingFace transformers.

Talk at GIN Conference in Toronto

Published:

I gave a talk at the GIN 2022 Conference in Toronto about “Continuous Surveillance of Clinical Practice Guidelines through Natural Language Processing - Experiences from the GGPONC Project”. It was a very inspiring event with great conversations about the role NLP can play in guideline development and evidence synthesis.

Two papers accepted at AIME

Published:

I am happy to announce that two papers got accepted at the International Conference of Artificial Intelligence in Medicine AIME 2023:

xMEN Toolkit

Published:

We have released xMEN - a Toolkit for Cross-Lingual Medical Entity Normalization on GitHub.

oncology

Paper published in Briefings in Bioinformatics

Published:

Our paper “Knowledge bases and software support for variant interpretation in precision oncology” has been published in Briefings in Bioinformatics! Thanks to all collaborators from the HiGHmed consortium.